10 Best Galapagos Islands Multiday Tours in September 2026

Get a customized trip to Galapagos Islands in September 2026

Plan a multi-country or regional adventure across Galapagos Islands in September 2026, with help from a local expert.

Marion PassierTravel Expert in Ecuador
Alejandro JacomeTravel Expert in Colombia & Ecuador
Maria SzlafszteinTravel Expert in Argentina, Bolivia, Brazil, Chile, Ecuador, Paraguay, Peru & Uruguay
Clara GonzalezTravel Expert in Argentina, Bolivia, Brazil, Chile, Ecuador, Paraguay, Peru & Uruguay

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Accommodations

BudgetSimple stays with essential amenities. Typically guesthouses, hostels or hotels rated below 3 stars — clean, no-frills, and great for value-conscious travelers.
Mid-rangeComfortable and reliable 3-star stays. Expect private rooms, en-suite bathrooms, and solid amenities — a great balance between comfort and cost.
PremiumUpscale 4-5 star hotels and lodges. Enjoy high-end service, refined comfort, and premium locations — ideal for travelers seeking extra indulgence.

Machu Picchu & The Galápagos Islands Aboard The Yolita - September 2026

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Super Sales

Machu Picchu & the Galápagos Islands aboard the Yolita - September 2026

No booking fees

Best price guaranteed

Combine the awe-inspiring wonders of the Incas with the extraordinary wildlife of the Galápagos on this unforgettable 17-day adventure through Peru and Ecuador. Glide through the Sacred Valley by rail en route to the legendary Machu Picchu, savour the culinary magic of Lima, and set sail aboard the Yolita to explore the hidden gems of the Galápagos. From the untouched beauty of Genovesa in the north to the volcanic landscapes of Isabela in the west, every stop offers something extraordinary. Hike to the crater rim of the Sierra Negra Volcano, relax on pristine white-sand beaches, and snorkel alongside playful sea lions. Experience the best of both worlds in two of South America’s most enchanting countries.

Explorer

Tour Type

Small Group Tour

Accommodation

Hotel, Hut

Age Range

12-100 yrs

Operated in

english

Destinations

Quito, Lima, Genovesa Island, Ba

Quito, Lima, Genovesa Island, Bartolome Island, Isabela Island, Urbina Bay, Punta Espinoza, Santiago Island, Cusco, Sacred Valley, Aguas Calientes, Galapagos Islands

10% OFF TODAY

Duration17 days

From

USD 8,999

USD 8,099

Saving

USD 900

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Peru and Ecuador Discovery Tour - September 2026

Trip customizable

Best price guaranteed

Embark on a 23-day adventure through Peru, Ecuador, and the Galapagos Islands, where diverse cultures, breathtaking landscapes, and unique wildlife await. Begin in Peru with Lima’s vibrant markets, culinary experiences, and a walk through its colonial and modern districts. Journey to Lake Titicaca, exploring ancient cultures on Taquile and Uros Islands. In Cusco, visit iconic Inca sites and discover the Sacred Valley, leading to the legendary Machu Picchu. Then, venture into the Amazon at Puerto Maldonado, exploring the rainforest and its exotic wildlife from a secluded jungle lodge. Next, wander through Quito, Ecuador’s colonial heart, and taste its famous chocolate. In the Galapagos, encounter giant tortoises, snorkel among sea lions, and trek volcanic trails on Isabela Island. Finally, unwind in Guayaquil, enjoying coastal sights and vibrant local life. Prepare to be captivated by the wonders of South America—an adventure of a lifetime awaits! See the itinerary section below for more details.

Food tours

Tour Type

Private Tour

Age Range

1-79 yrs

Operated in

English

Destinations

Cusco, Machu Picchu, Quito, Lima

Cusco, Machu Picchu, Quito, Lima, Puerto Maldonado, Puno, Galapagos Islands, Guayaquil, Amazon Peru, Sandoval Lake, Puerto Quito, Puerto Ayora, Isabela Island, Taquile Island, Sacred Valley

Duration23 days

From

USD 7,670

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Super Sales

The Galápagos: Wildlife of Santa Cruz & Isabela Islands - September 2026

(4 reviews )

No booking fees

Best price guaranteed

This was a trip of a lifetime! G adventures and our CEO's, Felipe and Gustavo, made everything so enjoyable and easy! Getting to the Galapagos was no easy feat and our CEO's handled everything with professionalism and enthusiasm. I felt like I was able to show up and not have to think about anything. I will definitely be booking Gluxe adventures again!

Explorer

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-100 yrs

Operated in

english

Destinations

Quito, Galapagos Islands, Isabel

Quito, Galapagos Islands, Isabela Island, Santa Cruz

Duration8 days

From

USD 4,599

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Peru & Galapagos Discovery - 15 Days - September 2026

No booking fees

Best price guaranteed

Take in the highlights of Peru and the Galapagos Islands on this 15 day tour, which travels from Lima to Guayaquil. Explore enchanting Cusco and the Sacred Valley. Discover Machu Picchu - the incredible Lost City of the Incas and visit the Uros Islands on serene Lake Titicaca. Fly to Ecuador for a tour of Guayaquil before ending your adventure with a four night cruise around the beautiful Galapagos Islands, encountering incredible wildlife.

Explorer

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-80 yrs

Operated in

english

Destinations

Lima, Guayaquil, Galapagos Islan

Lima, Guayaquil, Galapagos Islands, Cusco, Sacred Valley, Machu Picchu, Puno

Duration15 days

From

USD 10,405

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Quito & Galapagos Explorer - 5 days - September 2026

No booking fees

Best price guaranteed

Embark on an express tour of the Galapagos island of Santa Cruz, from the Ecuadorean capital of Quito. Spot giant tortoises roaming in the Highlands and snorkel alongside sea lions and turtles. Hike to one of the island's finest viewpoints and set out to sea on a full day boat trip with an ex-fisherman, to take in the incredible marine life and scenery. End your tour back in Quito or Guayaquil, Ecuador's second city.

Explorer

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-80 yrs

Operated in

english

Destinations

Quito, Santa Cruz, Galapagos Islands

Duration5 days

From

USD 1,415

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Super Sales

Majestic Peru & Southern Galapagos Cruise (Grand Queen Beatriz) - September 2026

No booking fees

Best price guaranteed

Explore Peru and the Galapagos on this epic adventure from Lima to Quito. In the ancient land of the Incas, you’ll uncover historic architecture, vast Andean landscapes, ancient ruins, busy markets and welcoming locals. Visit the famed Machu Picchu – one of the Seven Wonders of the World – and maybe opt to take the One Day Inca Trail trek to see the citadel from two angles. Share two pachamanca meals with locals– one in the middle of the desert near the Nazca Lines and one in the Andean community of Huilloq. Then, fly to Quito for your week-long sailing voyage through the incredibly scenic southern isles of the Galapagos. Watch as sea lions, iguanas, giant tortoises and exotic birds go about their daily business. Go snorkelling near mighty manta rays, turtles and tropical fish and soak up the natural, rugged landscapes of the area, seeing what Charles Darwin saw more than 180 years ago.

CruiseExplorerWildlife

Tour Type

Small Group Tour

Accommodation

Ship Cabin, Hotel

Age Range

15-99 yrs

Operated in

english

Destinations

Quito, Lima, Sacred Valley, Agua

Quito, Lima, Sacred Valley, Aguas Calientes, Cusco, Isla Santa Cruz, Isla Isabela, Galapagos Islands, Paracas, Nazca, Arequipa, Puno

Duration20 days

From

USD 10,000

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Nature and Culture in Ecuador - September 2026

Trip customizable

Best price guaranteed

Discover Ecuador's rich culture and breathtaking landscapes on this unforgettable tour. Begin in the historic heart of Quito, exploring its well-preserved colonial architecture and vibrant streets. Delight in a unique chocolate experience, savoring Ecuador's finest cacao. Next, venture to the awe-inspiring Galapagos Islands. Witness the incredible wildlife of Santa Cruz and Isabela Island, from giant tortoises to playful sea lions, and embark on exhilarating hikes up volcanic craters. Conclude your journey in Guayaquil, where the bustling cityscape meets the serene River Guayas. Explore the iconic Malecon 2000 Boardwalk and the historic Santa Ana Hill. This adventure promises a perfect blend of history, nature, and culture, making for an extraordinary experience in Ecuador. For more details, please see the itinerary section below. .

Marine wildlife

Tour Type

Private Tour

Age Range

1-80 yrs

Operated in

english, spanish

Destinations

Quito, Galapagos Islands, Guayaq

Quito, Galapagos Islands, Guayaquil, Baltra Island, Isla Isabela, Sierra Negra

Duration10 days

From

USD 4,815

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Quito & Galapagos Explorer (Superior) - 5 days - September 2026

No booking fees

Best price guaranteed

Explorer

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-80 yrs

Operated in

english

Destinations

Quito, Santa Cruz, Galapagos Islands

Duration5 days

From

USD 1,745

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Quito And Legend Galapagos Cruise - September 2026

Trip customizable

Best price guaranteed

This journey will take you through the ancient splendors of Quito and the exotic islands of the Galapagos with their endemic animals. Begin your journey in Quito, the breathtaking capital city surrounded by the Andes Mountains. From there you will catch your flight to Baltra Island and sail to Santa Cruz, where you will learn about the volcanic soils and search for the world- famous Giant Tortoises. Next, you will travel to incredible places as Genovesa Island and Darwin Bay, where you will have the chance to see the Red-footed Boobies, as well as experience on sand, rock and lava formations so common in this area. Your next destinations will be Plaza Island and Santa Fe Island, where you will be immediately distracted by the abundant sea lions. On different stops you will have the chance to spot different variety of birds, such as Blue Footed Boobies, Frigate Birds, Red- Billed Tropicbirds, Swallow-Tailed Gulls. You will also have the opportunity to snorkel in turquoise waters and wonder at Galapagos amazing aquatic life. End you exploration the by Bachas Beach and visit the lagoon with wading birds, marine iguanas and sometimes even flamingoes. Finally fly back to Quito to connect with your flight back home.

CruiseWildlife

Tour Type

Cruise Tour

Accommodation

Ship Cabin, Hotel

Age Range

8-99 yrs

Operated in

english

Destinations

Quito, Galapagos Islands, Darwin

Quito, Galapagos Islands, Darwin Bay, Santa Fe Island, Baltra Island

Duration6 days

From

USD 3,622

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All Galapagos Islands Tours in September 2026

Page 3 of 37 Trips in Galapagos Islands during September 2026 with 66 Reviews

Get a customized trip to Galapagos Islands in September 2026

Page 3 of 37 Trips in Galapagos Islands during September 2026 with 66 Reviews

Machu Picchu & the Galápagos Islands aboard the Yolita - September 2026

Peru and Ecuador Discovery Tour - September 2026

The Galápagos: Wildlife of Santa Cruz & Isabela Islands - September 2026

Peru & Galapagos Discovery - 15 Days - September 2026

Quito & Galapagos Explorer - 5 days - September 2026

Majestic Peru & Southern Galapagos Cruise (Grand Queen Beatriz) - September 2026

Nature and Culture in Ecuador - September 2026

Quito & Galapagos Explorer (Superior) - 5 days - September 2026

Quito And Legend Galapagos Cruise - September 2026

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All Galapagos Islands Tours in September 2026

Page 3 of 37 Trips in Galapagos Islands during September 2026 with 66 Reviews

Get a customized trip to Galapagos Islands in September 2026

Page 3 of 37 Trips in Galapagos Islands during September 2026 with 66 Reviews