10 Best Galapagos Islands Multiday Tours in September 2025

5-Day Galapagos Land-based Tour: Santa Cruz & Isabela - September 2025

Trip customizable

Best price guaranteed

This 5-day Galapagos Islands tour allows you to explore the Islands just like Charles Darwin! Swim alongside colorful fishes, sea urchins, and starfish while snorkeling. You might even spot some sharks! The volcanic islands are also home to Giant Tortoises. See these fantastic reptiles, as well as other creatures, including blue-footed boobies, Galapagos sea lions, albatrosses, marine iguanas, and frigate birds in their natural habitat. You will have the full assistance of a naturalist guide. There are so many breathtaking sights in this natural paradise. Galapagos awaits, so let’s go island hopping!

Trekking and Hiking

Tour Type

Group Tour

Accommodation

Hotel

Age Range

5-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Santa Cruz, I

Galapagos Islands, Santa Cruz, Isla Santa Cruz, Tintoreras, Baltra Island

Duration5 days

From

USD 1,635

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Essential Ecuador And Peru - September 2025

(1 review )

Trip customizable

Best price guaranteed

Hotels were good and except for the one in Cusco, they were very well located. Itinerary was great. I was met with friendly guides and drivers at each stage. City tours were excellent.

Wildlife

Tour Type

Group Tour

Accommodation

Hotel

Age Range

8-99 yrs

Operated in

english

Destinations

Cusco, Lima, Galapagos Islands

Cusco, Lima, Galapagos Islands, Guayaquil, Sacred Valley, Quito, Santa Cruz, Puerto Ayora

Duration11 days

From

USD 2,834

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14 Day Trip: Galapagos & Machu Picchu - September 2025

Trip customizable

Best price guaranteed

On this 14-day guided tour trip, you will visit the highlights of both Ecuador and Peru. Experience the highlights of the City of Quito, Cotopaxi National Park, the Galapagos Islands: Santa Cruz, El Chato, Charles Darwin Station, Pinzon Island / Isabela Island, Tintoreras, and Cabo Rosa Tunnels. In Peru, you will have the opportunity to get to know the highlights of the ancient Inca civilization. Explore the city of Cusco, the Sacred Valley, the mountain of colors, and Machu Picchu. Visit Inca structures, and learn about the historic Inca settlements and their history. You will be accompanied by a guide, who will assist you with anything you need. We will also provide you with transportation, accommodation and some meals.

Trekking and HikingWildlife

Tour Type

Group Tour

Accommodation

Hotel

Age Range

5-80 yrs

Operated in

english, spanish

Destinations

Cusco, Machu Picchu, Quito, Lima

Cusco, Machu Picchu, Quito, Lima, Galapagos Islands, Santa Cruz, Sacred Valley, Cotopaxi National Park, Mitad Del Mundo, Isla Isabela, Los Túneles

Duration14 days

From

USD 3,995

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YACHT ISABELA II ISLANDS OF FIRE ADVENTURE (Thurs - Mon) - September 2025

Trip customizable

Best price guaranteed

The unique bird and animal species of the Galapagos Islands inspired Charles Darwin's theory of evolution by natural selection. In this five-day tour, we try to see and understand what makes Galapagos and its many inhabitants different. Led by expert naturalists, we will visit different islands and bays to meet their residents, including the Galapagos giant tortoise, marine iguana, penguins, flightless cormorant and more. We will also be visiting Charles Darwin Research Station and Giant Tortoise Breeding Center to learn about the scientific research and conservation efforts underway to conserve the Galapagos' ecosystem. We will also explore the volcanic landscape of the islands, as well as take part in activities like snorkeling, glass-bottom boat tour, kayaking and paddle boarding. Our mother ship will be Yacht Isabela II, which offers the perfect, intimate space for exploring the Galapagos in comfort. Measuring just a little over 183 feet (55 meters), this three-deck vessel has 20 cabins that sleep up to 40 guests, with several indoor and outdoor communal spaces that give guests the opportunity to revel in the mesmerizing views of the islands. The latest in sustainable technology makes Isabela II the ideal yacht to navigate around the Galapagos without disturbing their delicate ecosystem.

Expedition toursWildlife

Tour Type

Small Group Tour

Accommodation

Ship Cabin

Age Range

6-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Baltra Island

Galapagos Islands, Baltra Island, Bartolome Island, Santa Cruz, Isabela Island

Duration5 days

From

USD 4,514

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YACHT LA PINTA DARWIN’S LEGACY (Fri - Thurs) - September 2025

Trip customizable

Best price guaranteed

Take an amazing tour of the Galapagos Islands on board Yacht La Pinta. On this seven-day tour, we will take you to the best sites around Galapagos, offering once-in-a-lifetime encounters with exotic marine and land animals as well as several bird species. The Galapagos Islands are nature lovers' haven, with so much to see and explore. Walk among the stunning volcanic formations overlooking beautiful shorelines; spot the famous inhabitants of the Galapagos, such as the giant tortoise, marine iguana, Galapagos penguin, flightless cormorant; and enjoy fun activities like swimming, snorkeling, kayaking and glass-bottom boat ride. Yacht La Pinta offers a completely safe travel experience. Each cabin provides not only ample space and comfort but a spectacular view of the Galapagos Islands’ unique landscapes. The ship’s modern feel extends to its hot tub, cardio gym, and sundeck. Throughout the trip, enjoy a splendid dining experience, featuring delicious, healthy, and top-quality food along with tasty bar options. The entire crew aboard La Pinta will do their utmost to ensure that your Galapagos trip becomes a truly moving and memorable experience. Please scroll down to the itinerary section for more details.

Expedition toursCruiseWildlife

Tour Type

Small Group Tour

Accommodation

Ship Cabin

Age Range

1-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Baltra Island

Galapagos Islands, Baltra Island, Isla Fernandina, Urbina Bay, Rábida Island, Santa Cruz, Floreana Island

Duration7 days

From

USD 7,867

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Galapagos Discovered - 6 days - September 2025

No booking fees

Best price guaranteed

GALAPAGOS CRUISE - CENTRAL, EAST & SOUTH ISLANDS: Every year the Galapagos Islands tempt throngs of travellers to its shores in search of unique wildlife and other-worldly landscapes. Explore these volcanic islands on a 4-day cruise aboard the M/C Anahi catamaran. Hopping from island to island, discovering what makes it so special. Start and end your Galapagos adventure with a night in captivating Quito, Ecuador's capital.

CruiseWildlife

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-80 yrs

Operated in

english

Destinations

Quito, Galapagos Islands, Espano

Quito, Galapagos Islands, Espanola Island, Floreana Island, Isla Santa Cruz

Duration6 days

From

USD 3,895

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Peru and Ecuador Discovery Tour - September 2025

Trip customizable

Best price guaranteed

Embark on a 23-day adventure through Peru, Ecuador, and the Galapagos Islands, where diverse cultures, breathtaking landscapes, and unique wildlife await. Begin in Peru with Lima’s vibrant markets, culinary experiences, and a walk through its colonial and modern districts. Journey to Lake Titicaca, exploring ancient cultures on Taquile and Uros Islands. In Cusco, visit iconic Inca sites and discover the Sacred Valley, leading to the legendary Machu Picchu. Then, venture into the Amazon at Puerto Maldonado, exploring the rainforest and its exotic wildlife from a secluded jungle lodge. Next, wander through Quito, Ecuador’s colonial heart, and taste its famous chocolate. In the Galapagos, encounter giant tortoises, snorkel among sea lions, and trek volcanic trails on Isabela Island. Finally, unwind in Guayaquil, enjoying coastal sights and vibrant local life. Prepare to be captivated by the wonders of South America—an adventure of a lifetime awaits! See the itinerary section below for more details.

Food tours

Tour Type

Private Tour

Age Range

1-79 yrs

Operated in

English

Destinations

Cusco, Machu Picchu, Quito, Lima

Cusco, Machu Picchu, Quito, Lima, Puerto Maldonado, Puno, Galapagos Islands, Guayaquil, Amazon Peru, Sandoval Lake, Puerto Quito, Puerto Ayora, Isabela Island, Taquile Island, Sacred Valley

Duration23 days

From

USD 7,670

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YACHT ISABELA II SEABIRD SANCTUARY EXPEDITION (Mon - Fri) - September 2025

Trip customizable

Best price guaranteed

See the incredible animal and bird species of the Galapagos Islands, such as giant tortoises, marine iguanas, sea lions, penguins and frigate birds, in this five-day exclusive journey. Throughout the trip, we will be staying in a yacht (Isabela II), stopping at popular islands and bays to learn about their unique ecosystem with the help of expert naturalist guides. There will also be activities like snorkeling, glass-bottom boat tour, kayaking and paddle boarding. Yacht Isabela II offers the perfect, intimate space for exploring the Galapagos Islands in comfort. Measuring just a little over 183 feet (55 meters), this three-deck vessel has 20 cabins that sleep up to 40 guests, with several indoor and outdoor communal spaces. The ship also has a restaurant, a hot tub, a cardio gym, a bar and lounge, and even a library with a computer station. The latest in sustainable technology also makes Isabela II the ideal yacht to navigate around the Galapagos without disturbing their delicate ecosystem.

Expedition toursCruiseWildlife

Tour Type

Small Group Tour

Accommodation

Ship Cabin

Age Range

6-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Baltra Island

Galapagos Islands, Baltra Island, Isla Santiago, Isla Genovesa, Santa Fe Island

Duration5 days

From

USD 4,514

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All Galapagos Islands Tours in September 2025

8 Trips in Galapagos Islands during September 2025

8 Trips in Galapagos Islands during September 2025

5-Day Galapagos Land-based Tour: Santa Cruz & Isabela - September 2025

Essential Ecuador And Peru - September 2025

14 Day Trip: Galapagos & Machu Picchu - September 2025

YACHT ISABELA II ISLANDS OF FIRE ADVENTURE (Thurs - Mon) - September 2025

YACHT LA PINTA DARWIN’S LEGACY (Fri - Thurs) - September 2025

Galapagos Discovered - 6 days - September 2025

Peru and Ecuador Discovery Tour - September 2025

YACHT ISABELA II SEABIRD SANCTUARY EXPEDITION (Mon - Fri) - September 2025

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Food, wine, events and nightlife

Adventure and sport

Wildlife, landscapes and nature

Boat tours, water sports and marine wildlife

Sightseeing, attractions, culture and history

Air tours, road trips and transfers

Beach, romance, getaways and relaxation

Special interests and hobbies

All Galapagos Islands Tours in September 2025

8 Trips in Galapagos Islands during September 2025

8 Trips in Galapagos Islands during September 2025