10 Best Ecuador Multiday Tours in September 2026

Get a customized trip to Ecuador in September 2026

Plan a multi-country or regional adventure across Ecuador in September 2026, with help from a local expert.

Marion PassierTravel Expert in Ecuador
Alejandro JacomeTravel Expert in Colombia & Ecuador
Maria SzlafszteinTravel Expert in Argentina, Bolivia, Brazil, Chile, Ecuador, Paraguay, Peru & Uruguay
Clara GonzalezTravel Expert in Argentina, Bolivia, Brazil, Chile, Ecuador, Paraguay, Peru & Uruguay

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5-Day Galapagos Land-based Tour: Santa Cruz & Isabela - September 2026

Trip customizable

Best price guaranteed

This 5-day Galapagos Islands tour allows you to explore the Islands just like Charles Darwin! Swim alongside colorful fishes, sea urchins, and starfish while snorkeling. You might even spot some sharks! The volcanic islands are also home to Giant Tortoises. See these fantastic reptiles, as well as other creatures, including blue-footed boobies, Galapagos sea lions, albatrosses, marine iguanas, and frigate birds in their natural habitat. You will have the full assistance of a naturalist guide. There are so many breathtaking sights in this natural paradise. Galapagos awaits, so let’s go island hopping!

Trekking and Hiking

Tour Type

Group Tour

Accommodation

Hotel

Age Range

5-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Santa Cruz, I

Galapagos Islands, Santa Cruz, Isla Santa Cruz, Tintoreras, Baltra Island

Duration5 days

From

USD 1,635

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15 Days Exploring Ecuador's Wonders - September 2026

Trip customizable

Best price guaranteed

Embark on a captivating 15-day journey through Ecuador that promises a perfect blend of nature, culture and adventure. From Quito to Otavalo to Cotopaxi and Banos, this trip will take you through all popular destinations and hidden gems of Ecuador. Explore the historic sites, culture and natural wonders. Take an immersive tour of the remarkably preserved Quito historical sites, a testament to Latin America's vibrant past. Immerse yourself in the enchanting province of lagoons, savoring its gastronomic delights. Venture into the awe-inspiring landscapes surrounding an active volcano, culminating in the exploration of a magical turquoise lagoon. Ascend to the closest elevation to the sun at Chimborazo, revealing panoramic vistas. We have curated just the right itinerary that promises fun, adventure and discovery in equal measures.

Trekking and HikingBeach

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-60 yrs

Operated in

english, spanish

Destinations

Quito, Cuenca, Banos, Puerto Lop

Quito, Cuenca, Banos, Puerto Lopez, Montanita, Snorkelling, Amazon Ecuador, Cotacachi, Quilotoa, Chimborazo, Guamote

Duration15 days

From

USD 2,185

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4 Days Amazon Lodge Cuyabeno Reserve - September 2026

Trip customizable

Best price guaranteed

Embark on an unforgettable four-day adventure to the Cuyabeno Wildlife Reserve and immerse yourself in the sights and sounds of the jungle, where each moment promises unique encounter with wildlife and nature. Venture out on canoe rides along the pristine waterways, marveling at the reflections of the towering trees on the calm surface. Keep your eyes peeled for vibrant bird species, playful monkeys swinging through the branches, and elusive creatures like jaguars and pink river dolphins. At dusk, prepare for a mesmerizing experience as you witness the rainforest transform under the golden hues of the setting sun. Explore the jungle after dark, allowing the symphony of nocturnal creatures to captivate your senses. Listen to the sounds of hidden insects and frogs, and if you're lucky, catch a glimpse of the elusive creatures of the night. Engage in cultural exchanges with the indigenous communities living in the reserve, gaining insights into their traditional way of life and ancient knowledge of the rainforest. Learn about their sustainable practices and the deep spiritual connection they share with the natural world. A trip to Cuyabeno promises a journey into the heart of the Amazon rainforest, where you'll create memories that will stay with you for a lifetime. Immerse yourself in the wonders of nature, connect with vibrant wildlife, and discover the true magic of the Amazon.

Trekking and Hiking

Tour Type

Small Group Tour

Accommodation

Eco Lodge, Lodge

Age Range

12-70 yrs

Operated in

english, spanish

Destinations

Amazon Ecuador, Black Turtle Cove

Duration4 days

From

USD 388

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8 Days Ecuador: From Highlands to Hot Springs - September 2026

Trip customizable

Best price guaranteed

Embark on an extraordinary eight-day adventure that will immerse you in the diverse landscapes and rich culture of Ecuador. Begin your journey in the captivating streets of Quito, a city steeped in history and charm. Explore the vibrant markets of Otavalo, where you can haggle for unique treasures and immerse yourself in the local atmosphere. Discover the serene beauty of Cuicocha, a volcanic crater lake surrounded by stunning landscapes. Feel the power of Cotopaxi, one of the world's most active volcanoes, and marvel at the emerald waters of Quilotoa, a breathtaking crater lake. Witness the awe-inspiring Pailon del Diablo, a majestic waterfall that captivates the senses. Stand in the shadow of Chimborazo, Ecuador's highest peak, and experience the tranquility of the Papallacta hot springs, where relaxation meets natural beauty. Throughout the week, immerse yourself in the perfect blend of culture, nature, and pure relaxation, creating memories that will last a lifetime. Join us on this unforgettable journey through the heart of Ecuador.

Trekking and Hiking

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-70 yrs

Operated in

english, spanish

Destinations

Quito, Banos, Andean Desert, Cot

Quito, Banos, Andean Desert, Cotopaxi National Park, Chimborazo, Papallacta

Duration8 days

From

USD 930

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Galapagos Encounter: Southern Islands (grand Queen Beatriz) - September 2026

22% OFF TODAY

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Galapagos Encounter: Southern Islands (Grand Queen Beatriz) - September 2026

No booking fees

Best price guaranteed

Tick the Galapagos off your list on this week-long sailing voyage that takes in the very best of the southern islands. Rub shoulders with the local wildlife as sea lions, iguanas, giant tortoises and exotic birds of all shapes and sizes go about their daily business. Go snorkelling near mighty manta rays, turtles and tropical fish fill. Experience firsthand the natural, rugged landscapes of the Galapagos and see what Charles Darwin saw when he arrived on the isles more than 180 years ago and go hiking to discover the changing and unique landscapes of this incredible part of the world.

Sailing, yachting and motor boating

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

12-99 yrs

Operated in

english

Destinations

Quito, Baltra Island, Isla Isabe

Quito, Baltra Island, Isla Isabela, Floreana Island, Isla Santa Cruz

22% OFF TODAY

Duration6 days

From

USD 4,480

USD 3,482

Saving

USD 998

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6-Day Galapagos Islands: Snorkel, Hike &Wildlife - September 2026

Trip customizable

Best price guaranteed

Experience the highlights of the famed Galapagos Islands with this 6-day program! Swim alongside colorful fishes, sea urchins, and starfish while snorkeling; you might even spot some sharks! See the fantastic giant tortoises, which are endemic to the volcanic islands, as well as other creatures, including blue-footed boobies, Galapagos sea lions, penguins, marine iguanas, and frigate birds in their natural habitat. The highlight of this program is a trip to Isabela, Santa Cruz, and an uninhabited island. The trip includes full assistance from our naturalist guide, full transportation, accommodation, and even some meals.

Trekking and Hiking

Tour Type

Group Tour

Accommodation

Hotel

Age Range

5-80 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Isla Santa Cr

Galapagos Islands, Isla Santa Cruz, Santa Cruz, Tintoreras, Isabela Island, Baltra Island

Duration6 days

From

USD 2,295

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Galapagos Affordable 8 Days Tour - September 2026

(1 review )

Trip customizable

Best price guaranteed

A prime destination for wildlife viewing, the Galapagos Islands are on most people's bucket list destinations. Join us on this 'Galapagos Affordable 8 Days Tour' to explore this vaunted archipelago and its wildlife, many of which are found only in the Galapagos. Get to know more about this paradise that inspire Charles Darwin's theory of evolution by natural selection. Led by expert guides, see and learn about the unique bird, animal and marine species, including the giant tortoise, marine iguana, Darwin's finches, lava lizard, flightless cormorant, and Galapagos fur seal. The tour starts and ends in Guayaquil, taking you through several islands of the Galapagos, such as San Cristobal, Satna Cruz, and Isabela. Besides meeting the famous inhabitants of the Galapagos, you will also be taking part in various fun activities like swimming, snorkeling and volcano hiking. And if that's not enough, we also offer various optional activities and excursions for you to choose from. For further details, please go through the itinerary section below.

SnorkelingMarine wildlife

Tour Type

Small Group Tour

Age Range

8-79 yrs

Operated in

english, spanish

Destinations

Galapagos Islands, Guayaquil, Sa

Galapagos Islands, Guayaquil, San Cristobal Island, Isla Santa Cruz, Isabela Island, Bartolome Island, Baltra Island, Quito

Duration8 days

From

USD 2,150

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13 Days Andes and Amazon Journey - September 2026

Trip customizable

Best price guaranteed

Take a 13-day journey to the Andes and Amazon, which offers a variety of experiences. Explore the impressive sights of the active volcano and the stunning turquoise lagoon Quilotoa, which is truly enchanting. Immerse yourself in the lively atmosphere of Baños, the gateway to the Amazon, and spend a day exploring this vibrant region. Journey to the mystical rainforest at Cuyabeno Reserve, where you can uncover its secrets and exceptional biodiversity. Discover one of Latin America's immaculately preserved historic centers. Feel the weight of history in every cobblestone and enjoy exploring the province of lagoons, complete with delicious cuisine. This trip is a perfect blend of natural beauty, rich culture, and culinary delights, ensuring an unforgettable experience. See the itinerary section for more details.

Trekking and Hiking

Tour Type

Small Group Tour

Accommodation

Eco Lodge, Hotel, Lodge

Age Range

18-70 yrs

Operated in

english, spanish

Destinations

Quito, Otavalo, Quilotoa, Banos

Quito, Otavalo, Quilotoa, Banos, Cuyabeno Reserve, Tena

Duration13 days

From

USD 1,463

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12 Days Andean Adventure: Traversing Ecuador's Icons - September 2026

Trip customizable

Best price guaranteed

Experience the best of Ecuador on an exclusive women's journey, blending cultural immersion with natural wonders. From the vibrant markets of Otavalo to the tranquil Polylepis Lodge, enjoy spa treatments, Amazon adventures, and cultural engagements, immerse yourself in the heart of Ecuador's culture, history and natural beauty. Explore Baños, Quilotoa, and Cotopaxi, and participate in hands-on experiences like cooking classes and rose plantation visits. Connect with like-minded women travelers, savor local flavors, and delve into indigenous traditions. Enjoy nature walks, wildlife encounters, photography sessions at stunning sites and relaxing spa services during this epic all-women Ecuador vacation. See the itinerary section for more details.

Trekking and HikingHot springs

Tour Type

Small Group Tour

Accommodation

Hotel, Lodge

Age Range

18-70 yrs

Operated in

english, spanish

Destinations

Amazon Ecuador, Quito, Cotopaxi

Amazon Ecuador, Quito, Cotopaxi National Park, Amazon Jungle Lodge, Otavalo, Banos

Duration12 days

From

USD 2,500

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4 Days Archidona Amazon Lodge Kiwcha Community - September 2026

Trip customizable

Best price guaranteed

Looking for the perfect Ecuadorian Amazon getaway that blends relaxation, adventure, culture, and nature? This destination has it all. Immerse yourself in the mystical energy of the Amazon as you explore lush jungles, uncover incredible flora and fauna, and connect with the vibrant traditions of local communities. From tranquil moments surrounded by the sounds of nature to thrilling adventures that awaken your sense of wonder, every corner of this enchanting place offers something unique. Discover species found nowhere else, share unforgettable experiences, and create memories that will leave you longing to return to this magical region.

Trekking and Hiking

Tour Type

Small Group Tour

Accommodation

Eco Lodge, Lodge

Age Range

8-85 yrs

Operated in

english, spanish

Destinations

Amazon Ecuador, Misahualli

Duration4 days

From

USD 480

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Classic Galapagos: Southern Islands (grand Queen Beatriz) - September 2026

20% OFF TODAY

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Classic Galapagos: Southern Islands (Grand Queen Beatriz) - September 2026

No booking fees

Best price guaranteed

Experience the unique wildlife of the Galapagos Islands as you drift across the Pacific Ocean on this 10-day sailing adventure. The beauty of these Ecuadorian isles is something to behold from aboard the M/Y Grand Queen Beatriz and you’ll retrace the 180-year-old voyage of Charles Darwin by sea with a naturalist guide by your side. Witness the giant tortoises that call these lands home and go birdwatching for blue-footed boobies and frigate birds. Each day, a new view will greet you out your cabin window, with a new array or wildlife to see up above and down below (snorkel, anyone?).

Sailing, yachting and motor boating

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

12-99 yrs

Operated in

english

Destinations

Quito, Baltra Island, Isla Isabe

Quito, Baltra Island, Isla Isabela, Floreana Island, Isla Santa Cruz, Santa Fe Island, Punta Suárez, Isla Lobos

20% OFF TODAY

Duration10 days

From

USD 8,515

USD 6,831

Saving

USD 1,684

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12 Days Exploring Ecuador: From the Andes to the Coast - September 2026

Trip customizable

Best price guaranteed

Experience the diverse beauty of Ecuador on a remarkable journey. Start your adventure with a smooth airport transfer to your hotel. Explore Otavalo's bustling market, marvel at the serene Cuicocha Lagoon, and immerse yourself in the craftsmanship of Cotacachi. Discover the heart of Quito on a city tour and venture to the breathtaking Cotopaxi National Park and Quilotoa Lagoon. Relax in the "Baños de Agua Santa" and encounter unique wildlife in the Chimborazo Fauna Production Reserve. Dive into the local culture at the Puruha Community, explore the vibrant Guamote Market, and witness the mystical Ozogoche—a journey through history at the Cañari Culture and Ruins of Ingapirca. Uncover Cuenca's charm on a city tour, visit Gualaceo and Chordeleg, and explore El Cajas National Park and a Cacao Farm. In Guayaquil, take in the city's highlights, then conclude your adventure with a transfer out from the airport to round off your Ecuadorian exploration. See the itinerary section for more details.

Trekking and Hiking

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

18-60 yrs

Operated in

english, spanish

Destinations

Quito, Cuenca, Guayaquil, Banos

Quito, Cuenca, Guayaquil, Banos, Cajas National Park, Cotacachi, Quilotoa, Chimborazo, Guamote

Duration12 days

From

USD 1,595

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Best of Ecuador and Galapagos Cruise - September 2026

Trip customizable

Best price guaranteed

Discover one of the most breathtaking destinations in Latin America with this small group tour of Ecuador and the Galapagos! Cruise along the turquoise waters and search for exotic species of animals in the Galapagos Islands! Begin your journey in Quito, the capital city of Ecuador surrounded by the Andes Mountains, where you will discover the Middle of the World and visit La Ronda. Explore the Otavalo Indian Market and Cuicocha Crater Lake before you travel to Papallacta, famous for its Natural Hot Springs and breathtaking landscapes. Explore the Amazonian Tropical Forest and discover the Manto de la Novia and Pailon del Diablo Waterfalls in Baños along with the gorgeous views of the Tungurahua Volcano! Head on a breathtaking cruise of the Galapagos Islands as you visit Sant Cruz, where you may see Giant Tortoises in their natural environment, sail to Floreana Island, an evergreen island with flaming pink-flamingos and incredible snorkeling opportunities, and explore Espanola, where animals reign the land! Encounter the Waved Albatross and pass by El Soplador, a giant blowhole that explodes to heights reaching 25 feet. Discover Blue Footed Boobies and Red-Billed Tropicbird among many other exotic species of animals before you travel to San Cristobal, the capital of the Galapagos, famous for their sea lions and volcanic rocks where you will end your tour of Ecuador and the Galapagos Islands.

Cruise

Tour Type

Group Tour

Accommodation

Ship Cabin, Lodge, Hotel

Age Range

8-99 yrs

Operated in

english

Destinations

Quito, Galapagos Islands, Amazon

Quito, Galapagos Islands, Amazon Ecuador, Floreana Island, Darwin Bay, Otavalo, Papallacta, Amazon Jungle Lodge, Banos, Guayaquil

Duration12 days

From

USD 3,727

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Combine Ecuador in September with Nearby Countries for an Unforgettable Trip

See tours with itineraries going through multiple countries, including Ecuador

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Alternatively, explore tours that are exclusively just Argentina and Ecuador, Brazil and Ecuador or Ecuador and Peru.

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Galapagos at a Glance: Southern Islands (Grand Daphne) - September 2026

No booking fees

Best price guaranteed

Welcome to the Galapagos Islands, guaranteed to fill even the most well-travelled adventurers with a sense of awe and wonder. On this six-day adventure cruise, you’ll see pink flamingos in the lagoons of Isla Floreana, sunbathe with sea lions along Gardner Beach, hike along the spectacular green shoreline of Punta Cormorant and snorkel in the clear waters of the archipelago. This active trip is a short but sweet introduction to the famed islands and the perfect addition to any South American adventure.

Wildlife

Tour Type

Small Group Tour

Accommodation

Hotel

Age Range

12-99 yrs

Operated in

english

Destinations

Quito, Isla Baltra, Floreana Isl

Quito, Isla Baltra, Floreana Island, Espanola Island, San Cristobal Island

Duration6 days

From

USD 3,635

USD 3,526

Saving

USD 109

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All Ecuador Tours in September 2026

Page 3 of 61 Trips in Ecuador during September 2026 with 47 Reviews

See Ecuador tours by duration

Get a customized trip to Ecuador in September 2026

Page 3 of 61 Trips in Ecuador during September 2026 with 47 Reviews

5-Day Galapagos Land-based Tour: Santa Cruz & Isabela - September 2026

15 Days Exploring Ecuador's Wonders - September 2026

4 Days Amazon Lodge Cuyabeno Reserve - September 2026

8 Days Ecuador: From Highlands to Hot Springs - September 2026

Galapagos Encounter: Southern Islands (Grand Queen Beatriz) - September 2026

6-Day Galapagos Islands: Snorkel, Hike &Wildlife - September 2026

Galapagos Affordable 8 Days Tour - September 2026

13 Days Andes and Amazon Journey - September 2026

12 Days Andean Adventure: Traversing Ecuador's Icons - September 2026

4 Days Archidona Amazon Lodge Kiwcha Community - September 2026

Classic Galapagos: Southern Islands (Grand Queen Beatriz) - September 2026

12 Days Exploring Ecuador: From the Andes to the Coast - September 2026

Best of Ecuador and Galapagos Cruise - September 2026

Combine Ecuador in September with Nearby Countries for an Unforgettable Trip

Galapagos at a Glance: Southern Islands (Grand Daphne) - September 2026

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Special interests and hobbies

All Ecuador Tours in September 2026

Page 3 of 61 Trips in Ecuador during September 2026 with 47 Reviews

See Ecuador tours by duration

Get a customized trip to Ecuador in September 2026

Page 3 of 61 Trips in Ecuador during September 2026 with 47 Reviews